Energy Flow and Metabolism: The Fuel of Physiology
Teaching Archive—Entry 007
Dr. Dean J. Scherer
Professor of Human Anatomy & Physiology
Every physiological process in the human body ultimately depends on the flow of energy.
Muscles contract, neurons transmit electrical signals, glands secrete hormones, and cells synthesize the molecules required for life. None of these activities can occur without a continuous supply of energy at the cellular level. In physiology, the study of how the body obtains, transforms, and uses energy is known as metabolism.
Metabolism is not a single reaction but an intricate network of biochemical pathways that allow cells to capture energy from nutrients and convert it into a form that can power cellular work. At the center of this system lies the molecule adenosine triphosphate (ATP), which serves as the primary energy currency of the cell.
To understand how ATP is produced, it is helpful to step back and consider the broader flow of energy through living systems.
Plants capture energy from sunlight through photosynthesis. In this process, carbon dioxide and water are converted into carbohydrates. The key feature of this reaction is the addition of hydrogen atoms to carbon molecules, storing energy within the chemical bonds of the resulting compounds.
In essence, plants use sunlight to hydrogenate carbon, producing molecules such as glucose that contain stored chemical energy.
Animals and humans then obtain these molecules through food. The process of cellular respiration essentially reverses what plants have done. Instead of building energy-rich carbon compounds, our cells gradually remove hydrogen atoms from these molecules, releasing the stored energy in a controlled manner.
As hydrogen is removed and transferred through metabolic pathways, the carbon skeleton of the molecule is ultimately released as carbon dioxide, which becomes a waste product of metabolism.
This energy extraction occurs through several coordinated stages.
The first stage is glycolysis, which occurs in the cytoplasm of the cell. During glycolysis, a molecule of glucose is split into two molecules of pyruvate. This process releases a small amount of energy and generates a modest amount of ATP. More importantly, it transfers hydrogen atoms to carrier molecules such as NAD⁺, forming NADH, which carries high-energy electrons to later stages of metabolism.
When oxygen is available, pyruvate enters the mitochondria and is further processed through the Krebs cycle, also known as the citric acid cycle or TCA cycle. Within this cycle, the carbon atoms from the original glucose molecule are progressively oxidized and released as carbon dioxide.
While the Krebs cycle produces only a small amount of ATP directly, its most important role is to generate high-energy electron carriers such as NADH and FADH₂. These molecules transport hydrogen and its associated electrons to the final stage of cellular respiration.
This stage occurs along the inner membrane of the mitochondria within the electron transport chain.
Here, electrons are transferred through a series of protein complexes embedded in the mitochondrial membrane. As electrons move through these complexes, energy is released and used to pump hydrogen ions across the membrane, creating an electrochemical gradient.
This gradient forms the basis of the chemiosmotic theory, proposed by Peter Mitchell. According to this theory, the movement of hydrogen ions back across the membrane through a specialized enzyme known as ATP synthase drives the production of ATP.
This process, known as oxidative phosphorylation, generates the majority of ATP produced during cellular respiration.
A critical requirement for this process is the presence of oxygen, which acts as the final electron acceptor in the electron transport chain. Oxygen combines with electrons and hydrogen ions to form water. Without oxygen to accept these electrons, the electron transport chain would stop, the proton gradient would collapse, and ATP production would rapidly decline.
This explains why oxygen is essential for sustained cellular energy production.
Under conditions where oxygen is limited, cells may rely on anaerobic metabolism, in which glycolysis continues but pyruvate is converted into other molecules such as lactate. While this allows a small amount of ATP to be produced temporarily, it is far less efficient than aerobic respiration and cannot support prolonged high-energy demands.
Seen in its entirety, cellular respiration represents a carefully coordinated process in which energy stored in nutrients is gradually released through oxidation reactions. Hydrogen atoms are transferred through metabolic pathways, electrons move through the mitochondrial transport chain, and the resulting proton gradient drives the synthesis of ATP.
At the same time, carbon atoms that once stored energy in plant-produced carbohydrates are ultimately released as carbon dioxide, completing the cycle of energy flow between plants and animals.
Understanding these processes allows students to see metabolism not simply as a series of biochemical reactions but as a fundamental mechanism by which living systems capture, store, and utilize energy.
In physiology, the remarkable coordination of cellular metabolism provides the fuel that powers every biological function—from the contraction of muscle fibers to the transmission of nerve impulses and the regulation of complex organ systems.
In this way, metabolism truly represents the energetic foundation of physiological life.

